CodeSandbox

If you exceed the Codespace resources, we have prepared a solution using CodeSandbox. These are the steps to follow:

  1. Go to the website: CodeSandbox.
  2. Sign in using your GitHub or your Google Account (top right corner).
  3. Once signed-in, click on + Create (top right corner).
  4. Select Docker CodeSanbox.
  5. On the Configure window leave everything as default and click on Create Devbox.
  6. Wait until the microVM is created.
  7. Now it looks like VS code. Create a new terminal then.
  8. Run the following commands on the terminal:
curl -s https://get.sdkman.io | bash
source "/root/.sdkman/bin/sdkman-init.sh"
sdk install java 17.0.10-tem
curl -s https://get.nextflow.io | bash
chmod +x nextflow
export PATH=${PATH}:/project/workspace
git clone https://github.com/jeffe107/taxoflow_tutorial
cd taxoflow_tutorial
export NXF_VER=25.10.4
export NXF_SYNTAX_PARSER=v2
  1. Now you should be into the repository folder, just like on GitHub Codespaces.